Aminoglycoside-Related Hearing Loss

Mutations in the mitochondrial 12S rRNA gene MT-RNR1 are associated with hearing loss after aminoglycoside exposure, and with non-syndromic hearing loss in the absence of aminoglycoside exposure. 

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Mutations in the mitochondrial 12S rRNA gene MT-RNR1 are associated with hearing loss after aminoglycoside exposure, and with non-syndromic hearing loss in the absence of aminoglycoside exposure. 

The aminoglycosides are a class of antibiotics including streptomycin, gentamicin, kanamycin, amikacin, neomycin, and tobramycin. Determination of mutation status allows the greatest opportunity for prevention or minimization of hearing loss due to future aminoglycoside exposures, and helps define the etiology of existing hearing loss.

The Aminoglycoside-Related Hearing Loss test detects approximately 99% of MT-RNR1 mutations through Gene Sequence Analysis of the entire gene at mitochondrial nucleotides 648 through 1601.

Disease Name 
Aminoglycoside-Related Hearing Loss
Disease Information 

Mutations in the mitochondrial 12S rRNA gene MT-RNR1 are associated with hearing loss after aminoglycoside exposure and with non-syndromic hearing loss in the absence of aminoglycoside exposure. The aminoglycosides are a class of antibiotics including streptomycin, gentamicin, kanamycin, amikacin, neomycin, and tobramycin. The natural target of aminoglycosides is the bacterial ribosome, which is structurally similar to the mitochondrial ribosome. MT-RNR1 mutations such as A1555G are thought to increase aminoglycoside binding to mitochondrial ribosomes and reduce mitochondrial protein synthesis, resulting in oxidative stress and death of sensitive cochlear hair cells.1 Other mutations in this gene have been identified in individuals with post-exposure hearing loss.2

Hearing loss following aminoglycoside exposure in MT-RNR1 mutation carriers may be sudden or delayed and varies in severity but is often severe to profound.3 Mutation carriers who are not exposed to aminoglycosides may also develop hearing loss.1 Specific mutation carrier rates and risk figures for hearing loss with or without aminoglycide exposure are not well established and vary by ethnicity.1 The variability in onset and penetrance appears to be governed by a threshold model of environmental contributions, the mitochondrial background haplotype, and multiple nuclear modifier genes.1

Although mutations in MT-RNR1 account for a significant number of cases, aminoglycoside-related hearing loss can also occur sporadically as a result of aminoglycoside ototoxicity, often related to receiving what is generally accepted as a toxic dose.1  Hearing loss is a well-known side-effect of aminoglycoside therapy in the general population, and patients who test negative for MT-RNR1 mutations still have a risk of hearing loss as a complication of aminoglycoside therapy.

Testing Benefits & Indication 

Determination of mutation status allows the greatest opportunity for prevention or minimization of hearing loss due to future aminoglycoside exposures, and helps define the etiology of existing hearing loss. Indications are:

  • diagnostic testing for individuals with hearing loss after aminoglycoside exposure
  • diagnostic testing for individuals with maternally-inherited hearing loss, with or without aminoglycoside exposure
  • carrier testing for individuals with family history of maternally-inherited hearing loss, with or without aminoglycoside exposure
  • carrier testing for relatives of known mutation carriers
  • carrier testing for care planning in advance of aminoglycoside therapy (aminoglycosides are an important antibacterial therapy in the ongoing management of lung disease in cystic fibrosis)
Test Description 

This test is available on its own, or by reflex after a positive cystic fibrosis DNA test result in our laboratory. PCR based double-stranded automated sequencing of the entire MT-RNR1 gene at mitochondrial nucleotides 648-1601 is performed in the sense and antisense directions. Nucleotide numbering is according to the revised Cambridge Reference Sequence HUMMTCG JO1415.2 (http://www.mitomap.org/euk_mitos.html). The three known gross deletions of approximate sizes 4.7 kb, 4.9 kb, and 3.9 kb that include the MT-RNR1 gene may be detected due to lack of PCR amplification. Heteroplasmy (a mixture of normal and mutant mitochondria) is not reliably detected by this assay. Specific mutation analysis for known family mutations in MT-RNR1 is also available.

Mutation Detection Rate 

Approximately 99% of MT-RNR1 mutations are detectable by this test. A negative result cannot rule out the possibility that the patient may carry a mutation in a tissue other than the one tested, or that heteroplasmy may be present the tissue that was tested.

Specimen Requirements 

Blood: Collect 3-5 cc from adult or 2 cc minimum from child into EDTA purple-top tube (first choice) or ACD yellow-top tube (second choice). Store at room temperature or refrigerate. Ship at room temperature.
Blood Spot: Minimum of one complete spot approximately 0.5 inch in diameter on S&S 903 collection paper or similar. Store in a clean plastic bag at room temperature. Ship at room temperature.
Saliva: Collect 2 ml into Oragene™ DNA Self-Collection container. Store and ship at room temperature.
DNA: Send 20 μg in TE at 50-100 ng/μl. Store frozen and ship on ice or dry ice.
Prenatal: Prenatal samples are not accepted for this test due to the inability to reliably assess heteroplasmy.

Billing Codes 
Test Code Technique CPT Codes
1320 MT-RNR1 Gene Sequence Analysis 83891x1, 83894x4, 83898x3, 83904x6, 83909x6, 83912x1

 

Turnaround Time 
Technique Days
MT-RNR1 Gene Sequence Analysis 10-21

 

Genes 
References 

1 Fischel-Ghodsian N et al. Mitochondrion. 2004;4:675-694.
2 Li R et al. J Med Genet. 2004;41:615-620.
3 Fischel-Ghodsian N et al. Am J Otolaryngology.1997;18:173-178.